distinct evolutionary properties
| Appendix to paper: |
| Genomic analysis of the TRIM family reveals two groups of genes with distinct evolutionary properties |
| M. Sardiello, S. Cairo,
B. Fontanella, A. Ballabio and G. Meroni |
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Human TRIM genes and their orthologs from different vertebrates |
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| Click on the boxes to visualize sequence information of
genes (green) and pseudogenes (orange) |
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| TRIM name |
Syn |
Hs |
Mm |
Rn |
Cf |
Bt |
Gg |
| TRIM1 | MID2 |
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| TRIM2 | RNF86, Narf |
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| TRIM3 | BERP, HAC1, RNF22, RNF97 |
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| TRIM4 | RNF87 |
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| TRIM5 | RNF88 |
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| TRIM6 | RNF89 |
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| TRIM7 | GNIP, RNF90 |
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| TRIM8 | GERP, RNF27 |
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| TRIM9 | RNF91, SPRING |
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| TRIM10 | HERF1, RFB30, RNF9 |
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| TRIM name |
Syn |
Hs |
Mm |
Rn |
Cf |
Bt |
Gg |
| TRIM11 | BIA1, RNF92 |
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| TRIM13 | CAR, LEU5, RNF77, RFP2 |
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| KIAA0129* | TRIM14, PUB |
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| TRIM15 | RNF93, ZNFB7 |
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| EBBP | TRIM16 |
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| TRIM17 | RBCC, TERF, RNF16 |
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| TRIM18 | MID1, FXY, OSX, XPRF, GBB1, RNF59, ZNFXY |
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| TRIM19 | PML, MYL, RNF71 |
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| PYRIN | TRIM20, MARENOSTRIN, FMF, MEFV |
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| TRIM21 | RO/SSA, SSA, RO52, RNF81 |
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| TRIM name |
Syn |
Hs |
Mm |
Rn |
Cf |
Bt | Gg |
| TRIM22 | STAF50, RNF94 | |
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| TRIM23 | ARD1, RNF46 |
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| TRIM24 | PTC6, TF1A, RNF82, TIF1A, hTIF1, TIF1ALPHA |
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| TRIM25 | EFP, Z147, RNF147 |
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| TRIM26 | AFP, RNF95, ZNF173 |
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| TRIM27 | RFP, RNF76 |
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| TRIM28 | KAP1, TF1B, RNF96, TIF1B |
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| ATDC | TRIM29 |
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| TRIM31 | RING, RNF, HCG1, HCGI |
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| TRIM32 | HT2A, TATIP, LGMD2H |
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| TRIM name |
Syn |
Hs |
Mm |
Rn |
Cf |
Bt | Gg |
| TRIM33 | TIF1q, PTC7, RFG7, TIFG |
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| TRIM34 | IFP1, RNF21 |
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| TRIM35 | HLS5, MAIR |
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| TRIM36 | RNF98, RBCC728, HAPRIN |
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| TRIM37 | MUL, TEF3 |
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| TRIM38 | RNF15 |
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| TRIM39 | RNF23 |
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| TRIM40 | RNF35 |
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| TRIM41 | |
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| TRIM42 | |
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| TRIM name |
Syn |
Hs |
Mm |
Rn |
Cf |
Bt | Gg |
| TRIM43 | |
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| DIBP | TRIM44 |
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| TRIM45 | RNF99 |
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| TRIM46 | TRIFIC |
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| TRIM47 | GOA, RNF100 |
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| RNF101 | TRIM48 |
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| TRIM49 | RNF18 |
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| TRIM50 | |
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| RNF102 | TRIM52 |
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| TRIM54 | MURF1, RNF30 |
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| TRIM name |
Syn |
Hs |
Mm |
Rn |
Cf |
Bt | Gg |
| TRIM55 | RNF29 |
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| TRIM56 | RNF109 |
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| TRIM58 | BIA2 |
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| TRIM59 | TRIM57, RNF104, TSBF1 |
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| TRIM60 | RNF129 |
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| TRIM61 | |
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| TRIM62 | |
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| TRIM63 | RNF28, MURF2, IRIS |
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| TRIM64 | |
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| TRIM65 | |
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| TRIM name |
Syn |
Hs |
Mm |
Rn |
Cf |
Bt | Gg |
| TRIM65a | |
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| KIAA0298 | TRIM66 |
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| TRIM67 | TNL |
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| TRIM68 | SS-56, RNF137 |
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| TRIM71 | LIN41 |
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| TRIM72 | |
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| TRIM73 | |
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| TRIM74 | |
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| TRIM75 | |
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| * The names in green identify the 8 non-canonical TRIM genes | |||||||
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| TRIM genes
specific to non-primate mammalian orders |
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| Genes paralogous to human
TRIM5/6/22/34 |
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| Mus musculus | Trim12, Trim12a, Trim12b | Peptide comparison |
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| Rattus norvegicus | Trim12a | Peptide comparison |
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| Mus musculus | Trim30, Trim30a,
Trim30b, Trim30c |
Peptide comparison |
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| Rattus norvegicus | Trim30b-like1, Trim30b-like2 | Peptide comparison |
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| Bos taurus |
LOC516599, DQ381150, DQ381151 | Peptide comparison |
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| Genes paralogous to human
TRIM43/48/49/64 |
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| Canis familiaris |
Trim64-like1, Trim64-like2, Trim64-like3, Trim64-like4 |
Peptide comparison |
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| Bos taurus |
Trim64-like1, Trim64-like2, Trim64-like3, Trim64-like4, Trim64-like5 |
Peptide comparison |
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| Mus musculus | Trim64a | Peptide comparison |
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| Rattus norvegicus |
Trim64a | Peptide comparison |
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| Other human
TRIM-related sequences with undefined transcriptional status |
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| TRIM43b, TRIM43ψ1, TRIM48b, TRIM48bBIS, TRIM48ψ1, TRIM48ψ2, TRIM48ψ3, TRIM49b, TRIM49c, TRIM51b, TRIM51bBIS,TRIM51c, TRIM51ψ1, TRIM51ψ2, TRIM51ψ3, TRIM51ψ4, TRIM64b, TRIM64c, TRIM64ψ1, TRIM64ψ2, TRIM64ψ3, TRIM64ψ4, TRIM64ψ5, TRIM64ψ6 | |||||||
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| Other Gallus gallus TRIM related sequences | |||||||
| Trim39, Trim27.2, Trim7.2, Trim27, TrimXM414477, Trim25like, Trim59like | |||||||
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| Tetraodon nigroviridis TRIMs | |||||||
TnCAG05903, TnCAG09730, TnCAG06722, TnCAG12975, TnCAG11865, TnCAG13222, TnCAG10830, TnCAG96465, TnCAF93916, TnCAG03044, TnCAF92535, TnCAG12384, TnCAG14116, TnCAF95617, TnCAF98545, TnCAF97697, TnCAG02104, TnCAG00228, TnCAF97011, TnCAG01464, TnCAG11221, TnCAG09022, TnCAF97010, TnCAG12264, TnCAF91694, TnCAG01123, TnCAF93116, TnCAG06133, TnCAF94067, TnCAG08216, TnCAF92537, TnCAF96577, TnCAG08725, TnCAF90324, TnCAG04762, TnCAG07558, TnCAF97398, TnCAF97325, TnCAF95730, TnCAG06343, TnCAF91134, TnCAG05781, TnCAF88002, TnCAF99287, TnCAG00441, TnCAF98050, TnCAG06103, TnCAG02380, TnCAG01112, TnCAF90464, TnCAG02574, TnCAG07029, TnCAG12414, TnCAG05274, TnCAF97006, TnCAF96112, TnCAF99480, TnCAF99179. |
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| Ciona intestinalis TRIMs | |||||||
| CiAK113642, CiAK114964, CiAK113489, CiAK115570, CiAK116296, CiBR000045, CiBr00080, CiBR000123, CiNM001078425, CiNM001078435, CiNM001078455 | |||||||
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| Danio rerio TRIMs | |||||||
| Zebrafish sequences |
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