Trim60 Cow pseudogene
 Pseudo-transcript (unspliced fragment)
TTTAGCATCAGTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAAT
GGACTGCTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCC
AACACCACAGTTCAAAAGCATCAATTCTTCAGTGTTCAGCCTTCTTCACA
GTCCAACTCTCACATCCATACATGACTACTGGAAAAACCATAGCCTTGAC
TAGACAAACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTAT
CTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCA
TGGCTGCAGTCACCATCTGCTGTGATTTTGGAGCCCAAAAAAATAAAGTC
TGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGCC
AGATGCCATGATCTTCATTTTCTGAATGTTGAGCTTTAAGCCAACTTTTT
CACTCTCCACTTTCACCTTCATCAAGAGGATTTTGAGTTCCTCTTCACTT
TCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCT
CCCGGCAATCTTGATTCCAGCTTGTGTTTCTTCCAGTCCAGCATTTCTCA
TGATGTACTCTGCATATAAGCAGGTACAAAATGAAGGGGTGCATATTTTA
ACAACACTAAATGAAAACTCCATAACATTTTCAGATCATGTTTCCACATT
AAAACATCTACTGAGGGAGGGAGAGGGCAAGTTTGTGCAGTCAGAACTGG
GATTCCTGATACATGCTATGACTATCCCACTACAGGTATCAAAACCTAAA
ATACCCTGACACCTTCTCATTTCAATTAAAGAAATATGGATTCAGTATTC
CTCACAATATTCTGGCCTGGGCAAAATTATCAAACCATTATGAGTAGATG
TGATTCTAGACCTTGAAATTGCTTACCCTAGGCTTATTGTCTCTGAGGAT
AGAAAAAGTGTGCAACAGGGAAAGAAAAAAGACAAAATCTTTGTTATAAC
TTAAGGAGATTTCATCTCTGCCCTGCTATCCTGGGTTCTAAGAGATTTAA
TTATGGCAGGCATTACTGGGAAGTAGAAGTGGAAAACAAAACTAAATGGA
CATTGAGTGTGTGTTAGGATAGTCTTCCTAGGAACTGGTGGAATCAGCTA
GTTCAAGATAGAGTCCAGGCAGCTGGGAGATATGTTGACAGCACTTAAGG
TGCAATGCATCCTAAGACAGCCAGCTTCTGCCAGTAATAAGACCCAGCAA
AATAGGCATTTTTCTGTGTCGGGACTTTCAACTTTAAGGGATCCAATATG
TTATTCTCTTCGTTTCTCAAGGATTCTCTATTCCTTATCAGTTCCTGGAA
AACAGGAACAAGCAGAGCTGCACGCAGTTCTCAGAACTGAGATCATGAGA
AAGGGCACCTGCTTGGATTCCTTTCAGGGACTCCCTTCAGT
 
 Comparison with other mammals
Hs = Homo sapiens
Mm = Mus musculus
Bt = Bos taurus
            1                                                         60
Hs ATGGAGTTTGTGACAGCCCTGGTGAACCTCCAAGAGGAGTCTAGCTGTCCCATCTGTCTG
Mm ATGGACTCC---ACAGCCCTAAAAATCTTGCAGGACAAATGTATCTGTTACATTTGTTCG
Bt TTTAGCATCAGTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGCTTG

61 120
Hs GAGTACTTGAAAGACCCAGTGACCATCAACTGTGGGCACAACTTCTGTCGCTCCTGCCTC
Mm GATTTCATGGAAGACCCAGTGACCAGTAGGTGTGGGCACAACTTCTGTTTTGCCTGCCTC
Bt GATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTC-------

121 180
Hs AGTGTATCCTGGAAGGATCTAGATGATACCTTTCCCTGTCCTGTCTGCCGTTTTTGCTTT
Mm CGTTTGCTCTGGGATGATCTACAAGGCAACATCTTCTGTCCCGTCTGTCAAACCCCCTTT
Bt ------------AAAAGCATCAATTCTTCAGTGTTCAGCCTTCTTCACAGTCCAACTCTC

181 240
Hs CCATACAAGAGCTTCAGGAGGAACCCCCAGCTCCGTAATTTGACTGAAATTGCTAAACAA
Mm CCACCGAAAAGCTTCAGCAGGAACTACCAGTTCCGTAACATGACTGAAACCATTAGGCTC
Bt ACATCCATACATGACTACTGGAAAAACCATAGCCTTGACTAGACAAACCTTTGTTGGCAA

241 300
Hs CTCCAGATTAGGAGGAGCAAGAGAAAGAGGCAGAAAGAGAATGCCATGTGTGAAAAACAC
Mm CTGCAAAAGAGACAGAGCAAGAGGAAGAGGCAGGAAGAACACACAGTATGTCCGAAGCAT
Bt AGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAG

301 360
Hs AACCAGTTTCTGACCCTCTT--CTGTGTTAAAGATCTAGAGATCTTATGTACAC------
Mm GATCAGCCTCTGGTCTTGTT--CTGTGTGAGGGATCGGGATGTCTTATGTACCC------
Bt TAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCTGTGATTTTGGAGCCCAAAAA

361 420
Hs AGTGCAGTTTCTCCACTAAACACCAGAAGCACTACATTTGCCCTATTAAGAAAGCTGCCT
Mm AGTGTAGCCTCTCTGTCGAACACCAGGGCCATTACACCTGCCCCATTAAGAAAGCCAGCT
Bt AATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGCCA

421 480
Hs C---------------TTATCACAGAGAAATTCTAGAAGGTAGCCTTGAGCCCTTGAGGA
Mm C---------------TTATCACAGGAAAGTCCTAGAGAGCGCCATTGCAACGTTAAAGT
Bt GATGCCATGATCTTCATTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACT

481 540
Hs ATAATATAGAACGAGTTGAAAAAGTGATAATTCTGCAAGGCAGCAAATCAGTGGAGCTGA
Mm TCGGAGTGAAACAAGTTGAAGAAAAGCTAGCTGTGCAGCACAGAAGGGTTCTTGGACTGA
Bt TTCACCTTCATCAAGAGGATTTTGAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCA

541 600
Hs AAAAGAAGGTAGAATATAAGAGGGAAGAAATAAAT----------TCTGAGTTTGAGCAA
Mm GGGAGGAGGCTCAATATCAAAAAATAGAGATACGT----------TATGAAATTGGGCAA
Bt T--------CTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTT

601 660
Hs ATAAGATTGTTTTTACAGAATGAACAAGAGATGATTCT-----TAGGCAGATACAAGATG
Mm ATCAAACTGTTCCTACAAAGTGAGTACGAAGCGCATCT-----AAATGAGAGCCACATGG
Bt GTGTTTCTTCCAGTCCAGCATTTCTCATGATGTACTCTGCATATAAGCAGGTACAAAATG

661 720
Hs AAGAGATGAACATTTTAGCAAAACTAAATGAAAACCTTGTAGAACTTTCAGATTATGTTT
Mm AGGAGCTGCGGAGTTTCTCAGAACTGAATGGATATCTTGAGACCCTGTTAGACCATGTTT
Bt AAGGGGTGCATATTTTAACAACACTAAATGAAAACTCCATAACATTTTCAGATCATGTTT

721 780
Hs CCACATTAAAACATCTACTGAGGGAGGTAGAGGGCAAGTCTGTGCAGTCAAACCTGGAAT
Mm CCACAGCAAAAGATCTGTTGAAGGAAGTGGAGGCCATACATGAAAGGTCAGATGTCACAC
Bt CCACATTAAAACATCTACTGAGGGAGGGAGAGGGCAAGTTTGTGCAGTCAGAACTGGGAT

781 840
Hs TACTGACACAAGCTAAGAGTATGC-ACCACAAGTATCAAAACCTAAAATGCCCTGAACTC
Mm TCCTGAGAGCCT-------------ACCACAAGTTGCAAAACCTTAAATCCCCCAAACCG
Bt TCCTGATACATGCTATGACTATCCCACTACAGGTATCAAAACCTAAAATACCCTGACACC

841 900
Hs TTTTCATTTAGATTAACAAAATATGGTTTCAGTCTTCCTCCTCAATATTCTGGCTTGGAC
Mm TGGTTATTTAGGACAAAGCAATATGGCCTCAGTCTCCCAGCGCAGTATTCTGGCTTGAGC
Bt TTCTCATTTCAATTAAAGAAATATGGATTCAGTATTCCT-CACAATATTCTGGCCTGGGC

901 960
Hs AGAATTATCAAGCCATTTCAAGTAGATGTGATTCTAGATCTCAACACAGCACATCCTCAA
Mm AGAATCATCAAGCAATTTCAAGCAGATGTGACTTTTGATCGTGACACAGCACACCCTCAG
Bt AAAATTATCAAACCATTATGAGTAGATGTGATTCTAGACCTTGAAATTGCTTACCCTAGG

961 1020
Hs CTTCTTGTCTCTGAGGATAGAAAAGCTGTGCGATATG--AAAGAAAAAAACGAAACATTT
Mm CTGGTTATTTCTGAGGATAGAAAATCTGTGTTTTATA--AAGAAGCATGGCCATGTGTGT
Bt CTTATTGTCTCTGAGGATAGAAAAAGTGTGCAACAGGGAAAGAAAAAAGACAAAATCTTT

1021 1080
Hs GTTATGACCCAAGGAGATTTTATGTCTGCCCTGCTGTCCTAGGCTCTCAGAGATTTAGTT
Mm GTGCTAGCCCTCAGAAATTTCACCTCTGGCCCGCTCTCCTGGGATGTAAAGGATTCGATT
Bt GTTATAACTTAAGGAGATTTCATCTCTGCCCTGCTATCCTGGGTTCTAAGAGATTTAATT

1081 1140
Hs CTGGCCGACATTACTGGGAAGTAGAAGTGGGAAACAAACCTAAATGGATATTGGGTGTGT
Mm CTGGTCGACAGTACTGGGAAGTCAAAGTGGGAGACAAGCCCAGATGGACACTGGGTGTGT
Bt ATGGCAGGCATTACTGGGAAGTAGAAGTGGAAAACAAAACTAAATGGACATTGAGTGTGT

1141 1200
Hs GTCAAGACTGTCTTCTTAGGAACTGGCAGGATCAGCCATCAGTTCTGGGCGGATTCTGGG
Mm GTCAAGCCCACTTTTCTGGGGACTGGAGCAATCAGTCCTCAGGT---------TTCTGGG
Bt GTTAGGATAGTCTTCCTAGGAACTGGTGGAATCAGCT---AGTTCAAGATAGAGTCCAGG

1201 1260
Hs CAATTGGGCGATACATGAAGAGTGGTTATGTTGCGTCAGGTCCTAAGACAACCCAGCTTC
Mm CAATTGGGCGGTATGCTGAGAATAGTTATGTCACCTATGGACCTCTAAGAACGGAGTTTC
Bt CAGCTGGGAGATATGTTGACAGCACTTAAGGTGCAATGCATCCTAAGACAGCC-AGCTTC

1261 1320
Hs TGCCAGTAGTAAAACCCAGTAAAATTGGTATTTTTCTGGACTATGAATTGGG--------
Mm TGCCAGTGGTGCGACCCAGCAAGGTCGGCATATTTTTGGATTATGAATTGGG--------
Bt TGCCAGTAATAAGACCCAGCAAAATAGGCATTTTTCTGTGTCGGGACTTTCAACTTTAAG

1321 1380
Hs --------TGATCTTTCCTTTTATAATATGAATGATAGGTCTATTCTCTATACTTTTAAC
Mm --------TGAGCTCTCCTTTTATAATATGAATGACAGGTCTCTTCTCTACACTTTCAGG
Bt GGATCCAATATGTTATTCTCTTCGTTTCTCAAGGATTCTCTATTCCTTATCAGTTCCTGG

1381 1440
Hs GATTGTTTCACAGAAGCCGTTTGGCCTTATTTCTATACTGGAACAGATTCCGAACCTCTT
Mm AATTCTTTTACCAGCACCCTTTGGCCTTATTTCTATATAGGAACAGATTCTGAATCTCTT
Bt AAAACAGGAACAAGCAGAGCTGCACGCAGTTCTCAGAACTGAGATCATGAGAAAGGGCAC

1441 1482
Hs AAAATCTGCTCAGTATCAGATTCTGAAAGATAA
Mm GAAATCTTAACCCACCCCACCCCAGACACAGGGTCTTACTAA
Bt CTGCTTGGATTCCTTTCAGGGACTCCCTTCAGT
 
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