TRIM65a Human pseudogene
 Pseudo-transcript (tentative spliced fragment)
ATGGCTTTTAAATTCCTAACATAGAGGGGGTGGTGATCTGCTCCATCTGC
CTGGTCCTCCTGAGATAACCACCGAGCCTGGAATGTGGCCACAGCTTCTG
TAAAGCCTGCTTTACTGCAGACAACAAGGAGTCCATGCCAAGCCAAGGAG
GGAAGAACAGAAATTTCCCTGTATGCTGCATCAGTTACTGTGCTGCGGAC
CTGCGGCCTAACTGGCATGTGGTCGACATAGTAGAGTGGCTCAGAGAGCC
CAAGGTGAGCCCTGAGGAGGGCCAGAAGAGAAATCTCTGTGAGCACCACA
AAGAGAAACTCTTGTTCTTCTGTAAGGAGGATGGGAAAGTCATTTGCTGG
CTTTGTGAGTGGTCTCAGGAGCACCATGGTCTCCACATGGTCCCAATGGA
GAAAGTTGCCCAGGAGTACCAGAAACTCCAAGCGGCTCTGCAGAAACTGA
GGAAGAAGTAGCAGGAAGCTGAGATGTTGGAAGCTGTCATCAGAGAAGAG
AATACTTTCTGCAAGAATCAAATGCAAAATGAGAAAAGGCTTGTCTAGGC
ACAGTTTAAAAAACTAAAGACTATCCTGGAGCATGAGGAACTGAGGATGG
TGCAGAAGCTGCAGTGCCAGGAGAATGCTGTTCTCAATACCCAGGGTACA
TCATGCATTGGTGATGAGCTGGTCCAGCAAAGCCAGATGTAAGAGACCTG
ATCTCGGTTCTGGAGCATCAGCTTCAGGG
 
 Comparison with other mammals
Hs = Homo sapiens
Cf = Canis familiaris
Bt = Bos taurus
            1                                                         60
Hs
Bt ATGCAGAGAGTTTCACGGCCAGTCCAGGACCAAGCCCCAGCCCTGCAGCCCACTGCCAAG
Cf ATGGAGAAAGTTTCATGGCCACTCCAGGACCACAACCCCACCTTCCAGCCCCCT------

61 120
Hs
Bt CTCTCAGGAGCTCCCCAAGGCCAGTTCCTGATGAATGACAGCAGTCTCTGCACGCTGGAG
Cf ------------CCCCAAGCCCAGCTCCTGATGAGTAACAGCAGTGTCCGCACATTCGAG

121 180
Hs
Bt GACCAAGTCCTCTGTCCCGTTTGCCTGGAGGTGTTCCGCAACCCAGTCACCACCGCCTGC
Cf GACCAGGTCCTCTGTCCCATTTGCCTGGAGGTGTTCCGTAACCCAGTCACCACCGCCTGC

181 240
Hs
Bt GGGCACAACTTCTGCATGAGCTGCCTCCAGGGTTTCTGGGACTACCAGGCCACCATGGGC
Cf GGGCACAACTTCTGCATGACCTGCCTCCAAGGTTTCTGGGACTACCAGGCTACTGCGGGC

241 300
Hs
Bt GAGCCACTCTACTGCCCCCAGTGCCGGGAGAGCTTCCCCACGCGGCCTCGCCTCTGCAAG
Cf GAGACCCTCTACTGCCCCCAGTGCCGAGAGAGCTTCCCATCCAGACCGCGCCTCTGCAAG

301 360
Hs
Bt AACGTCATCCTGGAGGAGATGGTGACATGCTTCACCCAGGCCAAGGGCCAGACCTTGGGG
Cf AATGCCATCCTGGAGGAGATGGTGACCTGCTTCACCCAGGCCAAGGACCAGACCTTGGGG

361 420
Hs
Bt TCCTCACGGAGCCTGGCCGGGCCCAGGGACGTGCCCTGCGACTTCTGTGCCCCTGAGAAG
Cf TCCTCACAGATCCTGGCCGGGCCTCGGGACGTGCCTTGCGACTTCTGTTCACCCCAGAAG

421 480
Hs
Bt CTCAAGTCCGTCAAGTCGTGCCTGCAGTGCATGGCCTCCCTGTGCGAGAAGCACCTGCGC
Cf CTCAAGTCAGTAAAGTCGTGTCTGCAGTGCATGGCCTCTCTGTGCGAGAAGCACCTGCGC

481 540
Hs
Bt AGCCACTTAGAGGACCAGGTGTTCCACGGGCACCAGCTGCTGGAGCCCGTGTGGGACCTC
Cf AGCCACTTCGAGGACCAGGTGTTCCAGGACCACCAGCTGCTGGAGCCCGTGTGGGACCTC

541 600
Hs
Bt AAGAGCCGGCTGTGCCGCAAGCACCGCAAGCTCCGGCGGCTGTACTGCCGCACCGAGGGC
Cf AAGAGCCGCCTGTGCCGGAAGCACCGCAAGCTGCGGCGGCTGTACTGTCGCACAGAAGGC

601 660
Hs
Bt TGCTGCGTGTGCGGGGCCTGCCTGCTGGAGGAGCACAAGAACCACGACACCATCCCGCTG
Cf TGCTGCGTGTGCGGGGCCTGTCTGCTGGAGGAGCACAAGAACCACGACACCATCCCCCTG

661 720
Hs GTCGAGGTTCAAAAGGTCCAGGACACTGTGGGGAAG
Bt GAGGAGGAGCGCGCACGCAAGGAGGTCGAGGTTCGGAAGGTCCAGGCCAACGTGGAGAAC
Cf GAGGAGGAACGTGCCCGCAAGGAGGTGGAGGTTCGGAAGGTCCAGGCCAATGTGGAAAAC

721 780
Hs CAGATGCTGATCATCGCTGCTGACGGCCAAAAGCACCAGGGTCGGGTGGCCTTTCTCTCA
Bt CAGATGTTGATCATCACCTCTGACAGCCAAAAGCACCGGGGCCAGGTGGCTTTTCTCTCG
Cf CAGATGCTGATCATCAACTCTGACAGCCAGAAGCACCGAGGGCAGGTGGCCTTTCTCTTG

781 840
Hs ---------------------------------------------------------GAG
Bt AAATTGATCCAGACGACTCGGGACGAGGTGAACGCCTGCTTCTCAGAGATCATCCAGGAG
Cf AAATTGATCCAGACAACACGTGATGAGGTGAACACCTGCTTCTCAGAGATCATCCAGGAG

841 900
Hs GTCAAACAGCTGCAGATGCAGATCTTGGATTTCGTGGAGAAAGAGGAAGCAGCCGCCCTG
Bt ATCAAACAGATGCAGATGAAGGTGCTGGATTTCGTGGAGAAAGAGGAGGCTGCCGCCCTG
Cf GTCAAACAGCTGCAGATGAAGGTCTTGGATTTTGTGGAGAAAGAGGAGGCGGCCGCTCTG

901 960
Hs GGGATGCTGAGCAGCTCCATCCAGCAGAGCCACAACCGGCTCCTGAAGCTGGAAGGAGAC
Bt GGGAAGCTGGGCGGCTCCATCCAGCAGAGTCACAACCGGCTCCTGAAGCTGGAGGGGGAC
Cf GGGAAGCTGGGCAGCTCCATCCAGCAGAGCCACAACCGGCTCCTGAAGCTGGAAGGGGAC

961 1020
Hs AGCGTCTGGCTCCACACCCTGCTCATCAACCAGAGTGACCAGCAACGTCTGCAGGGGTTC
Bt AGCATCTGGCTCCGAAGCCTGCTTGCCAACCGCAGCGACCAGCAGTTTCTGCAGGAGTTG
Cf AGCATCTGGCTCCGCACCCTGCTTGCCAACAGGAGTGACCAGCAATTTCTGCAGGAGTTC

1021 1080
Hs CTCCGACTGAAGCAGTTCTCAGCCTGCATGGAACCCCTGATGGGCATCAACTGTGAGGAA
Bt CCCAGGCTGAAGCACTTCCCTGCCTGCGTGGAGCCCCTGATGGGCACCAACTGCGAGGAG
Cf CCCAGGCTGAAGCACTTCCCTGCCTGCATGGAACCCCTGATGGGAACCAACTGTGAGGAG

1081 1140
Hs ACGCAGAGCTTCCCCCAGCTGCCAGAGACCCTGGCTGAGCTCTGGATGCGGCTGCTGGAC
Bt AAGCAGAGCTTCCTCCAGCTGCCAGAGACGTTGGCAGAGCTCCGGACCCGACTGGTGGAC
Cf AAACAGACCTTCCTCCAGTTGCCAGAGACTCTGGCCGAGCTCCGGACCCGGCTGATGGAC

1141 1200
Hs ATGGGCCTCAGCTTCTTTAACCAGCTCTCAAAGTTCTGGGATTACAGGA-----------
Bt ATGGGTCTCAGCTTCATCAACCAGCTCCTCCTGAAGGGCATTAAGATGAACTCCTATGAG
Cf GTGGGTCTCAGCTTCATCAATCAGATTCTCCTGAAGGGCATTAAGATGAACTCCTATGAG

1201 1260
Hs ----------------------------------TTACAGGTTACTGCAACCTGAACTTT
Bt GTGCTGCCCCCGGATGTGGACAGGAAAATACTTCTCAAGTGTTACTGCAACCTGAACTTC
Cf GTGCTGCCCCCAGCTGTGGACAGGAAAATACTTCTCAAATGTTACTGCAACCTCAACTTT

1261 1320
Hs GACCCCGCCACCGCCGGCGACGAGCTGTTCCAGCTCTAGGAGACCCGCTGGGTGCTGAAC
Bt GACGCCACCACGGCCAGCGAGGAGCTCTTCCTGTTCAAGGAGACCCACTCGGTGCTGAAC
Cf GACCCCACCACGGCCAGCGAGGAGCTGTTCCTGTTCAAGGAGACGCACTCGGTGCTGAAC

1321 1380
Hs CTGGGGATCCTCCTGGAGCCCCTGACAGGGGGCGGCCCCTTCCCGGGCTTCAAGCAGTGA
Bt CTGGGCATCCTCCTGGAGCCCTTCGCGGCGGGCGGCCCCTTCCCGGGCTTCAAACAGTGG
Cf CTGGGCATCCTCCTGGAGCCCCTCGGCGCGGGCGGCCCCGTCCCGGGCTTCAGGCAGTGG

1381 1440
Hs CCGCAGATGCTGTGCTCGCGCGGCCTGTCCGAGGGCCGCCACTAGGACGGGAGGTGGAGG
Bt CCGCAGGTGCTGTGCTCGCGCGGCCTGGCCGAGGGCCGCCACTACT--GGGAGGCCGACG
Cf CCGCAGGTGCTGTGCTCGCGCGGCCTGTCCGAGGGCCGCCACTACT--GGGAGGCCGACG

1441 1500
Hs TGTCCAACTCGTGGGTGTGCCTGGGCGTCACCTACCCCCGCAGCTCCCCGCTCGGCGGCC
Bt TGTCCAACTCGTGGGTGTGCCTGGGCGTCACCTACCGCCGCAGCCCCCCGCTCGGCGGCC
Cf TGTCCAACTCGTGGGTGTGCCTGGGCCTCACCTACCGCCGCAGCCCCCCGCTCGGCGGCC

1501 1560
Hs GCCCGAGCCGCAGCGTGGTCTACCTGCTGGGCCGCAACCCCTTCTCGTGGTGCCTGGAGT
Bt GCCCGCGCCGCAACATCGTCTATTTGCTGGGCCGCAACCCCTACTCGTGGTGCCTGGAGT
Cf GCCCGCGCCGCAACACCGTCCACCTGCTGGGCCGCAACCCCTACTCGTGGTGCCTGGAGT

1561 1620
Hs GGGAC------------------------GACAACGCGCAGACCGTGCTGCACGGCGCCT
Bt GGGACTCGCTCAAGTTCTCCGTGTGGCACAACAACACGCAGACGGTGCTGCACGGCGGCT
Cf GGGACTCGCTCAGGTTCTCCGTGTGGCACGACAACGCGCAGACGGTGCTGCACGGCGGCT

1621 1680
Hs ACCACCGCACGCTGGGCGTGGCGCTCGACTGCGACGCCGGCGGCTTGTCCTTCTACGGCC
Bt ACCACCGCACGCTCGGCGTGTTGCTCGACTGCGCGGCGGGCTGCCTCTCCTTCTACGGCG
Cf ACCACCGCACGCTCGGGGTGGCGCTCGACTGCGGCGCCGGCTGCCTGTCCTTCTACGGCG

1681 1740
Hs TGGCGGGTGGCGCCAGCCTCTTCTACCGCTTCCTGGCAGCCTTCCTCGAGCCGCTCTACC
Bt TGGCGGGCGGCGTGAGCCTCCTCTACCGCTTCCTCGCCTCCTTCCTGGAGCCGCTCTACC
Cf TGGCGGGCGGCCTGAGCCTGCTCCACCGCTTCCTCGGCTCCTTCCTGGAGCCGCTCTACC

1741 1800
Hs CCGCGGTCATGGTCAGCAGCGGCGCCTCGGCCACGCTCAAGCGGCGCCCGGAGCCCGCGC
Bt CTGCCGTCATGGTCAGCAGCGGCGCCTCGGTCACGCTCAAGCAGCGCCCCT---CCGAGG
Cf CCGCGGTCATGGTCAGCAGCGGCGCCTCGGTCACGCTCAAGCAGCGCCCGGAGGCGGAGG

1801
Hs CGCCC
Bt CCTAG
Cf CCTAG
 
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