Trim60 Rat pseudogene
 Pseudo-transcript (unspliced fragment)
ATGGACTTCAGAACTCTAGAAAACTTGCAGGACAAGTGTGACTGTTCCAT
TTGCCTGGATTTCTTAGAAGACCCAGGGACCACTAGATGTGGGCACAACC
GTCGTGCCTGCCTCAGTTTGTTCTAGAGTGATCTGAAACACATCTTCCCC
TGCTCTGTCTGCCAAGCTGGCTTCCCACAGAGAAGCTTGAGCAGAAAGCA
CCAGCATGGTCACGTGATGGAAATCGTTAGCCTCTTGCAGAAGAGACAGG
CAAGAGGCAGGAAGAGCACACGATGTGTCAGAAGCATGATCAGCCTCTGG
TCCAGCTCTGCGTGAAGGATCTAGATATTTTATGTACCCAGTGTAGCCTC
TCTGTTGAACACCAGGGCCATTACACCTGCCCCATTAAGAAAGCTGGCTC
TTACCACAGAAGAATTCTAGAGGGGGCCATTGAAACTTTGAAGTGCAAGG
TGAAAGGAGTCAAAAGAAGAAGAAGACCTAGCTCTGGGGTGCAGAAGAGT
TCTTGAAGTGAGGGAGGAGACAGAATATAAAAGAAATAAGTTGTGAATTT
GGGCCAATCAATCTGTTCCTGAAAAATGAGTATGAAGTGAATGTAAATGA
GATACACATTGAGGAGCTTGTGGGTTTATCAGAACTGAATGAATATCTCA
ACAATCTGTCAGACCACGTTTCCACAGCAAAAGATCTGTTGAAGGAAGCA
GAGGCCATACATGAAGGGTCAGATGTCACACTCCTGACAAGCACTCTGAG
AGCCTACCACAGGCTGCAAAACCTTAGATACCCCCAAACTGTAGTCATTC
AGGTCAAAGCACTATGGCCTCAGCCTCCCGCCACAGTATTCTGGCTTGGA
CAGAATCATTAAGTGATTTCAAACAGGTATGACTTGTGGTCTTGACATAG
CACACCCTCAGCTCGTTACTTCTGAGGATAGAAAGTCTGTGCTTTATAAA
GAAGCAAGGCAACATGTGTGTGCTGGCCCTCGGAAATTTCACCTCTGGGC
TGCTCTCCTGGGGTGTGAAGGATTCCATTCGGGTTGACTGTACTGGGGAG
TAAAAGTGGGAGACAAGCCCAGGTGGGCACTGGGTGTGTGTCAAGCCTGC
TTTTCTGGGGACTTGAGCAATCAGCCTTTGGTTGCCGAGGGCCTCTGGGC
AATTGGGAGGTAACTGAGAGTACCTATGTCACCTGTGGGCCTTCAAGAAC
TGAATTCTGCCAGTGGTGCGGCCCAGCAAGATTGGCAGCTTTTTGGATTA
TGAATTGGGTGAGCTCTCCTTCTACAATATGAATGACAGATCTCTTCTCT
ACACTTTCGGGAATTCTTTAACCAGCACTCTTTGGCCTTATTTCTCTACA
GGAACAGATTCTGAATCTCTCGAAATCTTAACCCACCCCACACCAGACAC
AGGGTCTTACTTA
 
 Comparison with other mammals
Hs = Homo sapiens
Mm = Mus musculus
Rn = Rattus norvegicus
            1                                                         60
Hs ATGGAGTTTGTGACAGCCCTGGTGAACCTCCAAGAGGAGTCTAGCTGTCCCATCTGTCTG
Mm ATGGACTCC---ACAGCCCTAAAAATCTTGCAGGACAAATGTATCTGTTACATTTGTTCG
Rn ATGGACTTC---AGAACTCTAGAAAACTTGCAGGACAAGTGTGACTGTTCCATTTGCCTG

61 120
Hs GAGTACTTGAAAGACCCAGTGACCATCAACTGTGGGCACAACTTCTGTCGCTCCTGCCTC
Mm GATTTCATGGAAGACCCAGTGACCAGTAGGTGTGGGCACAACTTCTGTTTTGCCTGCCTC
Rn GATTTCTTAGAAGACCCAGGGACCACTAGATGTGGGCACAACC---GTCGTGCCTGCCTC

121 180
Hs AGTGTATCCTGGAAGGATCTAGATGATACCTTTCCCTGTCCTGTCTGCCGTTTTTGCTTT
Mm CGTTTGCTCTGGGATGATCTACAAGGCAACATCTTCTGTCCCGTCTGTCAAACCCCCTTT
Rn AGTTTGTTCTAGAGTGATCTGAAACACATCTTCCCCTGCTCTGTCTGCCAAGCTGGCTTC

181 240
Hs CCATACAAGAGCTTCAGGAGGAACCCCCAGCTCCGTAATTTGACTGAAATTGCTAAACAA
Mm CCACCGAAAAGCTTCAGCAGGAACTACCAGTTCCGTAACATGACTGAAACCATTAGGCTC
Rn CCACAGAGAAGCTTGAGCAGAAAGCACCAGCATGGTCACGTGATGGAAATCGTTAGCCTC

241 300
Hs CTCCAGATTAGGAGGAGCAAGAGAAAGAGGCAGAAAGAGAATGCCATGTGTGAAAAACAC
Mm CTGCAAAAGAGACAGAGCAAGAGGAAGAGGCAGGAAGAACACACAGTATGTCCGAAGCAT
Rn TTGCAGAAGAGACAG-------GCAAGAGGCAGGAAGAGCACACGATGTGTCAGAAGCAT

301 360
Hs AACCAGTTTCTGACCCTCTTCTGTGTTAAAGATCTAGAGATCTTATGTACACAGTGCAGT
Mm GATCAGCCTCTGGTCTTGTTCTGTGTGAGGGATCGGGATGTCTTATGTACCCAGTGTAGC
Rn GATCAGCCTCTGGTCCAGCTCTGCGTGAAGGATCTAGATATTTTATGTACCCAGTGTAGC

361 420
Hs TTCTCCACTAAACACCAGAAGCACTACATTTGCCCTATTAAGAAAGCTGCCTCTTATCAC
Mm CTCTCTGTCGAACACCAGGGCCATTACACCTGCCCCATTAAGAAAGCCAGCTCTTATCAC
Rn CTCTCTGTTGAACACCAGGGCCATTACACCTGCCCCATTAAGAAAGCTGGCTCTTACCAC

421 480
Hs AGAGAAATTCTAGAAGGTAGCCTTGAGCCCTTGAGGAATAATATAGAACGAGTT------
Mm AGGAAAGTCCTAGAGAGCGCCATTGCAACGTTAAAGTTCGGAGTGAAACAAGTT------
Rn AGAAGAATTCTAGAGGGGGCCATTGAAACTTTGAAGTGCAAGGTGAAAGGAGTCAAAAGA

481 540
Hs -GAAAAAGTGATAATTCTGCAAGGCAGCAAATCAGTGGAGCTGAAAAAGAAGGTAGAATA
Mm -GAAGAAAAGCTAGCTGTGCAGCACAGAAGGGTTCTTGGACTGAGGGAGGAGGCTCAATA
Rn AGAAGAAGACCTAGCTCTGGGGTGCAGAAGAGTTCTTGAAGTGAGGGAGGAGACAGAATA

541 600
Hs TAAGAGGGAAGAAATAAATTCTGAGTTTGAGCAAATAAGATTGTTTTTACAGAATGAACA
Mm TCAAAAAATAGAGATACGTTATGAAATTGGGCAAATCAAACTGTTCCTACAAAGTGAGTA
Rn TAAAAGAA-----ATAAGTTGTGAATTTGGGCCAATCAATCTGTTCCTGAAAAATGAGTA

601 660
Hs AGAGATGATTCTTAGGCAGATACAAGATGAAGAGATGAACATTTTAGCAAAACTAAATGA
Mm CGAAGCGCATCTAAATGAGAGCCACATGGAGGAGCTGCGGAGTTTCTCAGAACTGAATGG
Rn TGAAGTGAATGTAAATGAGATACACATTGAGGAGCTTGTGGGTTTATCAGAACTGAATGA

661 720
Hs AAACCTTGTAGAACTTTCAGATTATGTTTCCACATTAAAACATCTACTGAGGGAGGTAGA
Mm ATATCTTGAGACCCTGTTAGACCATGTTTCCACAGCAAAAGATCTGTTGAAGGAAGTGGA
Rn ATATCTCAACAATCTGTCAGACCACGTTTCCACAGCAAAAGATCTGTTGAAGGAAGCAGA

721 780
Hs GGGCAAGTCTGTGCAGTCAAACCTGGAATTACTGACACAAGCTAAGAGTATGCACCACAA
Mm GGCCATACATGAAAGGTCAGATGTCACACTCCTGA------------GAGCCTACCACAA
Rn GGCCATACATGAAGGGTCAGATGTCACACTCCTGACAAGCACTCTGAGAGCCTACCACAG

781 840
Hs GTATCAAAACCTAAAATGCCCTGAA-CTCTTTTCATTTAGATTAACAAAATATGGTTTCA
Mm GTTGCAAAACCTTAAAT-CCCCCAAACCGTGGTTATTTAGGACAAAGCAATATGGCCTCA
Rn GCTGCAAAACCTTAGATACCCCCAAACTGTAGTCATTCAGGTCAAAGCACTATGGCCTCA

841 900
Hs GTCTTCCTCCTCAATATTCTGGCTTGGACAGAATTATCAAGCCATTTCAAGTAGATGTGA
Mm GTCTCCCAGCGCAGTATTCTGGCTTGAGCAGAATCATCAAGCAATTTCAAGCAGATGTGA
Rn GCCTCCCGCCACAGTATTCTGGCTTGGACAGAATCATTAAGTGATTTCAAACAGGTATGA

901 960
Hs TTCTAGATCTCAACACAGCACATCCTCAACTTCTTGTCTCTGAGGATAGAAAAGCTGTGC
Mm CTTTTGATCGTGACACAGCACACCCTCAGCTGGTTATTTCTGAGGATAGAAAATCTGTGT
Rn CTTGTGGTCTTGACATAGCACACCCTCAGCTCGTTACTTCTGAGGATAGAAAGTCTGTGC

961 1020
Hs GATATGAAAGAAAAAAACGAAACATTTGTTATGACCCAAGGAGATTTTATGTCTGCCCTG
Mm TTTATAAAGAAGCATGGCCATGTGTGTGTGCTAGCCCTCAGAAATTTCACCTCTGGCCCG
Rn TTTATAAAGAAGCAAGGCAACATGTGTGTGCTGGCCCTCGGAAATTTCACCTCTGGGCTG

1021 1080
Hs CTGTCCTAGGCTCTCAGAGATTTAGTTCTGGCCGACATTACTGGGAAGTAGAAGTGGGAA
Mm CTCTCCTGGGATGTAAAGGATTCGATTCTGGTCGACAGTACTGGGAAGTCAAAGTGGGAG
Rn CTCTCCTGGGGTGTGAAGGATTCCATTCGGGTTGACTGTACTGGGGAGTAAAAGTGGGAG

1081 1140
Hs ACAAACCTAAATGGATATTGGGTGTGTGTCAAGACTGTCTTCTTAGGAACTGGCAGGATC
Mm ACAAGCCCAGATGGACACTGGGTGTGTGTCAAGCCCACTTTTCTGGGGACTGGAGCAATC
Rn ACAAGCCCAGGTGGGCACTGGGTGTGTGTCAAGCCTGCTTTTCTGGGGACTTGAGCAATC

1141 1200
Hs AGCCATCAGTTCTGGGCGGATTCTGGGCAATTGGGCGATACATGAAGAGTGGTTATGTTG
Mm AGTCCTCAGGTT---------TCTGGGCAATTGGGCGGTATGCTGAGAATAGTTATGTCA
Rn AGCCTTTGGTTGCCGAGGGCCTCTGGGCAATTGGGAGGTAA-CTGAGAGTACCTATGTCA

1201 1260
Hs CGTCAGGTCCTAAGACAACCCAGCTTCTGCCAGTAGTAAAACCCAGTAAAATTGGTATTT
Mm CCTATGGACCTCTAAGAACGGAGTTTCTGCCAGTGGTGCGACCCAGCAAGGTCGGCATAT
Rn CCTGTGGGCCTTCAAGAACTGAATT-CTGCCAGTGGTGCGGCCCAGCAAGATTGGCAGCT

1261 1320
Hs TTCTGGACTATGAATTGGGTGATCTTTCCTTTTATAATATGAATGATAGGTCTATTCTCT
Mm TTTTGGATTATGAATTGGGTGAGCTCTCCTTTTATAATATGAATGACAGGTCTCTTCTCT
Rn TTTTGGATTATGAATTGGGTGAGCTCTCCTTCTACAATATGAATGACAGATCTCTTCTCT

1321 1380
Hs ATACTTTTAACGATTGTTTCACAGAAGCCGTTTGGCCTTATTTCTATACTGGAACAGATT
Mm ACACTTTCAGGAATTCTTTTACCAGCACCCTTTGGCCTTATTTCTATATAGGAACAGATT
Rn ACACTTTCGGGAATTCTTTAACCAGCACTCTTTGGCCTTATTTCTCTACAGGAACAGATT

1381 1433
Hs CCGAACCTCTTAAAATCTGCTCAGTATCAGATTCTGAAAGATAA
Mm CTGAATCTCTTGAAATCTTAACCCACCCCACCCCAGACACAGGGTCTTACTAA
Rn CTGAATCTCTCGAAATCTTAACCCACCCCACACCAGACACAGGGTCTTACTTA
 
BACK to index