Trim61 Rat pseudogene
 Pseudo-transcript (unspliced fragment)
ATGGAGCTTGCTGCAGGGCTGGCCAATCTCCAAGCAGAGGCCTACTGTCC
ATCTGTAAGAACTACTTCAAGAACCCAGTGACCATGGAATGTGGGCATGA
AGTCTGTCCTTCCTACATCATTGTGTTCTGGAAGGATCTAAAGGGTGGTT
TCCCCTGCCTTTCTTGTCACTTGAACCAACAAGGAAGGAATTGTTGAGCA
ATCAGCCACCAGGTGAGTTGACGGGCGTTACCATGGTGCCCCCCCCCCAA
AAAAAAGAGCAGTAGGGAATGGCAGGAAGGGAAGCTTTCAAGTGGGGAGC
CACAGCAGGCTTCCTGTCTGCTGCACAGCTTCCCCCCAAGTCACCTTGTT
GTGCCCATGGAGAACGCCTCCCTCTGCCATAGGAAACAAATCGACTTTTC
CGTTCAGCTGTGGAGGGAGATGGTGGAGTCAGTCCAGAAAGTAATTGCCA
CACAGGGGAGGAGATCACTAGAACTGAGAAAAAGAGCAGAACACAGAAGA
GAAGAAATGAAGTCTCAATGTGAACAGTAGAGATGGTTTCCCCAGGATGA
ACAAGAGAAGATTCTTGAGCAGTTACAAAGCAGAGAGATGAATGGGTTAG
CCAAACTTAAAAAAAAAAAACAAAAAACAAAAAACCTAGCGAAATTACCA
GGTCACGCTTCTTAATTAAAGCATCTGTTAAAAAGGATAAAGAACAAGGG
TGTAGTCAGACCTGGCATTGCTGGCAAGTGTTACAGATTTGTATGAGAGA
TACAAACACTCGGGATGGCCTGAGATTGCCTCAGTAAAACAGAGAGGATA
TGACTACAAGTTGCCTCTACAGTATTCTGACTTAGACAGAATTATCAAGC
AATTTCAAGGTGATGGAATTCTGGATCCTGAAACAGCAAATAGACTTAGT
CTCAAAGGATAAAAAAGCTGATCAATATGGGACTAGGGGATGGTATCCTA
TAGCACACGAAGATTTCGCTGTTACCCTGCCATTCTGGGCTCTGAGGGAG
ATAGCTTAGACAGACAATACTGGGACGTCAATGCGGAACACAAGTTTGAA
TGGCTCCTGGGGGTCTGTAGAGAGCCTTTTCCTGGGCATGGAAATGATGA
ACGGCTCTCAGTGCAGGATGGATTATGGGGAGTTGGGCTAAACGATTTGG
CAAATTATGTTGCATTAGGCCATGAGAAAAACCAATCTTCTGTCCAAAGT
AGCACCTAATAGGATTGGGAATTTTTTAGAGTCTGAAATGCATGAGTTCT
GTTTTACACTTTGAGTGTTAAGTCCCTTCTGCACAGGCTTAGCGACTGTC
CCAGTGGCACATGTTGGCCTTTGTTCTACACTGGCTAACACTGGCTATGG
CTACCTATCCTCTGAAGCTCTGCACAGTTGCAGATCCTGAGTGA
 
 Comparison with other mammals
Hs = Homo sapiens
Mm = Mus musculus
Rn = Rattus norvegicus
            1                                                         60
Hs ATGGAATTTGTTACGGCCCTGGCTGACCTCCGAGCAGAGGCTAGCTGTCCCATCTGTCTG
Mm ATGGAGCTTGCTGCAGGGCTGGCCGATCTCCAAGCAGAGGCTCGCTGTTCTGTCTGTAAG
Rn ATGGAGCTTGCTGCAGGGCTGGCCAATCTCCAAGCAGAGGCCTACTGTCCA-TCTGTAAG

61 120
Hs GACTACTTGAAAGACCCAGTGACCATCAGCTGTGGGCATAACTTCTGTCTCTCCTGCATC
Mm GAATACCTCAAGAACCCAGGGACCATGGAGTGTGGCCATAAAGTCTGTCTGTCCTGCACC
Rn AACTACTTCAAGAACCCAGTGACCATGGAATGTGGGCATGAAGTCTGTCCTTCCTACATC

121 180
Hs ATTATGTCCTGGAAGGATCTACATGATAGTTTCCCCTGCCCCTTTTGCCACTTTTGCTGT
Mm AGTGTGTTCTGGGAGGATCTAAAGGGTAGTGTCCCCTGCCCCTCTTGTCATTTGAACTGT
Rn ATTGTGTTCTGGAAGGATCTAAAGGGTGGTTTCCCCTGCCTTTCTTGTCACTTGAACCAA

181 240
Hs CCAGAAAGGAAATTTATAAGCAATCCCCAGCTGGGTAGTTTGACTGAAATTGCTAAG---
Mm CCAGGAAGGAACTTTTTGAGTAATCAGCCACCAGGTGAGTTCACCGAAGTTGCCATCTTG
Rn CAAGGAAGGAA-TTGTTGAGCAATCAGCCACCAGGTGAGTTGACGGGCGTTACCATGGTG

241 300
Hs -CAACTCCAGATAAGAAGCAAGAAGAGGAAGAGGCAGGAAGAGAAGCATGTGTGTAAGAA
Mm CCCCCTG----AAAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAA
Rn CCCCCCCCCCAAAAAAAAGAGCAGTAGGGAATGGCAGGAAGGGAAGCTTTCAAGTGGGGA

301 360
Hs GCATAATCAGGTTTTGACTTTCTTCTGTCAGAAAGACCTAGAGCTTTTATGTCCAAGGTG
Mm GCCACAACAGGTTTCC---------------------------------TGTCCACTGCG
Rn GCCACAGCAGGCTTCC---------------------------------TGTCTGCTGCA

361 420
Hs CAGTTTGTCCACTGATCACCAGCATCACTGTGTTTGGCCCATAAAGAAGGCTGCCTCCTA
Mm CAGCTTCCCCCC---------GAATCACTTTGTTTGGCCCGTGGAAAATGCTATCGTCTG
Rn CAGCTTCCCCCC---------AAGTCACCTTGTTGTGCCCATGGAGAACGCCTCCCTCTG

421 480
Hs TCATAGGAAAAAACTGGAGGAATACAATGCACCGTGGAAGGAGAGAGTGGAACTAATTGA
Mm CCACAGGAAACAAATTGACTGTTACATTAAGCTGTGGAGGGAGATGGTGGAGCCAATCCA
Rn CCATAGGAAACAAATCGACTTTTCCGTTCAGCTGTGGAGGGAGATGGTGGAGTCAGTCCA

481 540
Hs AAAAGTCATAACTATGCAAACCAGGAAATCACTGGAACTGAAGAAAAAGGTAAAACATAG
Mm GAAAGCAATTAGCACACAAAGGAAAGGATCGCTAGAACTGAGAAAAAGGACAGAATGCAG
Rn GAAAGTAATTGCCACACAGGGGAGGAGATCACTAGAACTGAGAAAAAGAGCAGAACACAG

541 600
Hs GGCAGAAGAAGTCAAGTCTGAATTTGAGCAACTTAGGTTATTTCTCCAAAATGAGCAAGA
Mm AAGAGAAAGAGTGAGGTCTCAATATGAACAGAATAGGTTGTTCCTCCAGGTTGAACGGAA
Rn AAGAGAAGAAATGAAGTCTCAATGTGAACAGTAGAGATGGTTTCCCCAGGATGAACAAGA

601 660
Hs GACTGTTCTTAGGCAATTACAAGATGAAGAGATGGATATTTTAGCACAACTAAATGAAAG
Mm GAAGATTCTTGGGCACTTACAAAGTGAAGAGATGGATGGGCTATCCAAACTAAACAAAAA
Rn GAAGATTCTTGAGCAGTTACAAAGCAGAGAGATGAATGGGTTAGCCAAACTTAAAAAAAA

661 720
Hs ------------------CCTAACAAAATTTTCAGATTATACCTCCTCATTAAAATATCT
Mm ------------------CCTAGCGAAATTATCAGATCACACCTCCTTGTTAAAGAGTCT
Rn AAAACAAAAAACAAAAAACCTAGCGAAATTACCAGGTCACGCTTCTTAATTAAAGCATCT

721 780
Hs ACTAAAGGAGATAGAGAGCATATATGTGAAGTCAGAACTGGAATTACTGGCAAATGTTAA
Mm GTTGAAAGATCTAAAGAGCCAGTGTGAAAAGTCAGAGCTGGCATTGCTGGCAAGTGTTAA
Rn GTTAAAAAGGATAAAGAACAAGGGTGTA--GTCAGACCTGGCATTGCTGGCAAGTGTTAC

781 840
Hs GGATATCTATCACAGATATGAGAATTTAAAATTCCCTGAGCTGTTTTTATTCAAATTAAA
Mm AGATTGGTACGAGAGATACAAACAGTCGGGATGGCCTGAGATGGCCTTAGTAACATTGAA
Rn AGATTTGTATGAGAGATACAAACACTCGGGATGGCCTGAGATTGCCTCAGTAAAACAGAG

841 900
Hs AAAATATGGTTACCATCTGCCTCCACAATATTCTGGCCTAGACAAAATTATCAAGCGATT
Mm AGGGTACGACTACAGGTTACCTCTACAGTATTCTGACTTAGACAGAATTATCAAGCGATT
Rn AGGATATGACTACAAGTTGCCTCTACAGTATTCTGACTTAGACAGAATTATCAAGCAATT

901 960
Hs TCAAGTAGATGTAATTCTAGATCCTGAAACAGCACATCGTAAACTTATAGTCTCAGAAGA
Mm TCAAGTTGATGTCATTCTGGATCCCGAAACAGCAAACTATAAGCTTACAGTCTCAAAGGA
Rn TCAAGGTGATGGAATTCTGGATCCTGAAACAGCAAATAGACTT-----AGTCTCAAAGGA

961 1020
Hs TAGAAAAACTGTGCGCTATGGAAATACAACACAAAATGTACCTCATAACCCAAGAAGATT
Mm TAAAAAAACAGTTAAATATGGGAGTTGGG---AGAGGGTGCCCTATAGCTCAAGAAAATT
Rn TAAAAAAGCTGATCAATATGGGACTAGGG----GATGGTATCCTATAGCACACGAAGATT

1021 1080
Hs TTATCTCCTCCCAGCTGTTCTGGGTTCTAAGGGATATAGTTGTGGCAGGCAGTACTGGGA
Mm TTGTTTTGACCCTGCTGTTCTGGGATCTGAGGGATATAGTTCTGACAGACAATACTGGGA
Rn TCGCTGTTACCCTGCCATTCTGGGCTCTGAGGGAGATAGCTTAGACAGACAATACTGGGA

1081 1140
Hs AGTAGAAGTGAAAGACAAGCCTGAATGGATTCTTGGTGTCTGTAATGACTGTCTTCCCAG
Mm GGTTGATGTGGAACTCAAGATGGAATGGGTTCTAGGGGTCTGTAGGGAGCCTTTTCCCAG
Rn CGTCAATGCGGAACACAAGTTTGAATGGCTCCTGGGGGTCTGTAGAGAGCCTTTTCCTGG

1141 1200
Hs AAGGAGGAAGAG---------------TCAACCAATTTTAGTACAGGATGGATTATGGGG
Mm GAGCAGGTATGCCGAACGGTTCTCTGATGAACAGTTCTCAGTGCAGGATGGATTATGGGG
Rn GCATGGAAATG---------------ATGAACGGCTCTCAGTGCAGGATGGATTATGGGG

1201 1260
Hs AATTTGGCGATCTAGTCAGAATAATTATATTGTATTGGGCCACAGGGAAATT-ATTCTGC
Mm AGTTGGGCTAGACAATTCCCAAACTTATGTTGCATTGGGTGGTGAGAAAATCCA-TCTTC
Rn AGTTGGGCTAAACGATTTGGCAAATTATGTTGCATTAGGCCATGAGAAAAACCAATCTTC

1261 1320
Hs TGCCACAAGTAATTCCTAGTAAGATTGGCATTTTTTTAGACTATGAAATGAATGAAGTTT
Mm TTCCCAAAGTATCACCTACTAGGATTGGGATTTTTTTAGATTCTGAAATGTATGAGGTTT
Rn TGTCCAAAGTAGCACCTAATAGGATTGGGAATTTTTTAGAGTCTGAAATGCATGAGTTCT

1321 1380
Hs CCTTTTATAATTTGAATGATAGATCTCTTCTCTATACTTTTAATGATAATTTTACAGGAG
Mm CGTTTTACAATTTGAGGGATAAATCCCTGCTGTACAGGTTTAGCGACTTACCTCGGGGCA
Rn -GTTTTACACTTTGAGTGTTAAGTCCCTTCTGCACAGGCTTAGCGACTGTCCCAGTGGCA

1381 1440
Hs CACTTTGGCCTTATTTTTATACTGGAACTGACT-----------CAAAACCTCTTAAAAT
Mm CATTTTGGCCTTACTTCTACACTGGATATGACTA-----------CGAGCCTCTGAAGAT
Rn CATGTTGGCCTTTGTTCTACACTGGCTAACACTGGCTATGGCTACCTATCCTCTGAAGCT

1441 1465
Hs TTCTACAGTAACAGATTCTGAATGA
Mm TTGCACAGTTGCAGATCTTGAGTGA
Rn CTGCACAGTTGCAGATCCTGAGTGA
 
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